TOD and urban logistical transportation as systems and methods could provide a win-win pattern for forming an urban structure. The systems and methods of the concept will be able to systematically reconfigure and update an existing urban region, regardless of whether developments are infill, redevelopments, or new developments at a variety of sites. The update will gradually transform the existing urban patterns, including land use configuration, into an urban structure of hierarchal urban spatial systems at different levels with matching urban transportation systems. The branch- or root-like hierarchal urban transport networks, with the links of the Internet’s nerve-like cyberspace, connect and integrate all urban elements into a being.